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作者:Andrew W. Harrington , Michael R. McKain , Daniel Michalski ...
来源:[J].BMC Genomics(IF 4.397), 2017, Vol.18 (1)Springer
摘要:Endogenous small interfering (esi)RNAs repress mRNA levels and retrotransposon mobility in Drosophila somatic cells by poorly understood mechanisms. 21 nucleotide esiRNAs are primarily generated from retrotransposons and two inverted repeat (hairpin) loci in Drosophila culture ...
作者:Andrew S. Mason , Janet E. Fulton , Paul M. Hocking ...
来源:[J].BMC Genomics(IF 4.397), 2016, Vol.17 (1)Springer
摘要:... A novel LTR retrotransposon classification pipeline, LocaTR, was developed and subsequently utilised to re-examine the chicken LTR retrotransposon annotation, and determine if the proposed chicken deficit is biologically accurate or simply a technical artefact.(#br) Results(#...
作者:Iulia Lupan , Paul Bulzu , Octavian Popescu ...
来源:[J].BMC Genomics(IF 4.397), 2015, Vol.16 (1)Springer
摘要:... Tracing the development of the VNTR through evolution we show for the first time how tandem repeats evolve within the constraints set by a functional, non-autonomous non-LTR retrotransposon in two different families - LAVA and SVA - in different hominoid lineages. Our analy...
作者:Gabriele Usai , Flavia Mascagni , Alberto Vangelisti ...
来源:[J].Genomics(IF 3.01), 2020, Vol.112 (2), pp.1611-1621
摘要:... A bioinformatics procedure was established to ascertain the occurrence of the same retrotransposon loci in the three genotypes. The results indicated that retrotransposon abundance variations between the hybrid and the mean value of the parents were due to i) co-segregation o...
作者:Maneesha , Kailash C. Upadhyaya
来源:[J].Journal of Genetics(IF 0.876), 2017, Vol.96 (4), pp.551-561Springer
摘要:... We have analysed genetic polymorphism of domesticated pigeon pea germplasm (47 accessions) across the world using earlier characterized panzee retrotransposon-based molecular markers. It was conjectured that since retrotransposons are interspersed throughout the genome, re...
作者:Christine Henke , Pamela L Strissel , Maria-Theresa Schubert ...
来源:[J].Retrovirology(IF 5.657), 2015, Vol.12 (1)Springer
摘要:... Mammalian retrotransposon transcripts ( Mart1-9 ), also called sushi-ichi- related retrotransposon-homolog ( SIRH ) genes, are a class of Ty3/gypsy LTR-retroelements showing moderate homology to the sushi-ichi LTR-retrotransposon in pufferfish. Rtl1/Mart1 and Peg10/Mart2 ex...
作者:Joelle Amselem , Marielle Vigouroux , Simone Oberhaensli ...
来源:[J].BMC Genomics(IF 4.397), 2015, Vol.16 (1)Springer
摘要:... The Class I LINE retrotransposon copies homologous to Avrk1 and Avra10 represent 6.5 % of the Bgh annotated genome and, among them, we identified 293 AVR/effector candidate genes. We also experimentally identified peptides that indicated the translation of several predicted p...
作者:Patrícia Aline Gröhs Ferrareze , Rodrigo Silva Araujo Streit , Francine Melise dos Santos ...
来源:[J].BMC Genomics(IF 4.397), 2017, Vol.18 (1)Springer
摘要:The absence of Argonaute genes in the fungal pathogen Cryptococcus gattii R265 and other VGII strains indicates that yeasts of this genotype cannot have a functional RNAi pathway, an evolutionarily conserved gene silencing mechanism performed by small RNAs. The success of the R26...
作者:Raúl Castanera , Gúmer Pérez , Leticia López-Varas ...
来源:[J].BMC Genomics(IF 4.397), 2017, Vol.18 (1)Springer
摘要:Coniophora olivacea is a basidiomycete fungus belonging to the order Boletales that produces brown-rot decay on dead wood of conifers. The Boletales order comprises a diverse group of species including saprotrophs and ectomycorrhizal fungi that show important differences in genom...
作者:Tifenn Donnart , Mathieu Piednoël , Dominique Higuet ...
来源:[J].BMC Genomics(IF 4.397), 2017, Vol.18 (1)Springer
摘要:The relative scarcity of Copia retrotransposons has been recently characterized in metazoans in comparison with the other superfamilies of LTR elements. Furthermore, Copia retrotransposons have often a particular dynamics that results in a highly predominant single clade of eleme...

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