全部文献期刊学位论文会议报纸专利标准年鉴图书|学者科研项目
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作者:Preeti Choudhary , Shailesh Kumar , Anand Kumar Bachhawat ...
来源:[J].BMC Bioinformatics(IF 3.024), 2017, Vol.18 (1)Springer
摘要:Knowledge of catalytic residues can play an essential role in elucidating mechanistic details of an enzyme. However, experimental identification of catalytic residues is a tedious and time-consuming task, which can be expedited by computational predictions. Despite significant de...
作者:Hai’e Gong , Haicang Zhang , Jianwei Zhu ...
来源:[J].BMC Bioinformatics(IF 3.024), 2017, Vol.18 (3)Springer
摘要:Residues in a protein might be buried inside or exposed to the solvent surrounding the protein. The buried residues usually form hydrophobic cores to maintain the structural integrity of proteins while the exposed residues are tightly related to protein functions. Thus, the accur...
作者:Jiyun Zhou , Qin Lu , Ruifeng Xu ...
来源:[J].BMC Bioinformatics(IF 3.024), 2017, Vol.18 (1)Springer
摘要:Prediction of DNA-binding residue is important for understanding the protein-DNA recognition mechanism. Many computational methods have been proposed for the prediction, but most of them do not consider the relationships of evolutionary information between residues.
作者:Yongjun Tang , Diwei Liu , Zixiang Wang ...
来源:[J].BMC Bioinformatics(IF 3.024), 2017, Vol.18 (13)Springer
摘要:... Distinguishing the RNA-binding residues in proteins is crucial for understanding how protein and RNA recognize each other and function together as a complex.
作者:Yuangen Yao , Rong Gui , Quan Liu ...
来源:[J].BMC Bioinformatics(IF 3.024), 2017, Vol.18 (1)Springer
摘要:As one of the most successful knowledge-based energy functions, the distance-dependent atom-pair potential is widely used in all aspects of protein structure prediction, including conformational search, model refinement, and model assessment. During the last two decades, great ef...
作者:Linus Scheibenreif , Maria Littmann , Christine Orengo ...
来源:[J].BMC Bioinformatics(IF 3.024), 2019, Vol.20 (1), pp.1-9DOAJ
摘要:... We analyzed the similarity of binding site annotations in these FunFams and incorporated FunFams into the prediction of protein binding residues. Results FunFam members agreed, on average, in 36.9 ± 0.6% of their binding residue annotations. This constituted a 6.7-fold inc...
作者:Fernando Masarin , Fernando Roberto Paz Cedeno , Eddyn Gabriel Solorzano Chavez ...
来源:[J].Biotechnology for Biofuels(IF 5.552), 2016, Vol.9 (1)Springer
摘要:... Specifically, the chemical composition and enzymatic hydrolysis of the residue produced from carrageenan extraction were evaluated to determine the conditions for efficient generation of carbohydrate bioproducts.(#br) Results(#br)The productivity and growth rates of K. alv...
作者:Jinlan Cheng , Shao-Yuan Leu , JY Zhu ...
来源:[J].Biotechnology for Biofuels(IF 5.552), 2015, Vol.8 (1)Springer
摘要:Abstract(#br) Background(#br)Forest residue is one of the most cost-effective feedstock for biofuel production. It has relatively high bulk density and can be harvested year round, advantageous for reducing transportation cost and eliminating onsite storage. However, forest residues...
作者:Wael I. Karain , Nael I. Qaraeen
来源:[J].BMC Bioinformatics(IF 3.024), 2015, Vol.16 (1)Springer
摘要:Abstract(#br) Background(#br)Weighted and un-weighted protein residue networks can predict key functional residues in proteins based on the closeness centrality C and betweenness centrality B values for each residue. A static snapshot of the protein structure, and a cutoff d...
作者:Frazier N. Baker , Aleksey Porollo
来源:[J].BMC Bioinformatics(IF 3.024), 2016, Vol.17 (1)Springer
摘要:... Residues forming an active site, whether it is a catalytic center or interaction interface, are frequently distant in a protein sequence. Hence, traditional sequence-based prediction methods focusing on a single residue (or a short window of residues) at a time may have diffi...

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