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作者:Kuang-Lim Chan , Rozana Rosli , Tatiana V. Tatarinova ...
来源:[J].BMC Bioinformatics(IF 3.024), 2017, Vol.18 (1), pp.1-7
摘要:Gene prediction is one of the most important steps in the genome annotation process. A large number of software tools and pipelines developed by various computing techniques are available for gene prediction. However, these systems have yet to accurately predict all or even most ...
作者:Klaus Mayer , Hans-Werner Mewes
来源:[J].Current Opinion in Plant Biology(IF 8.455), 2002, Vol.5 (2), pp.173-177
摘要:Abstract(#br)The first sequenced plant genome, from the small mustard plant Arabidopsis thaliana, was published at the end of 2000. The sequencing of the rice genome is well under way. The sizes of plant genomes vary by a factor of up to 1000, and many important crop plants have ...
作者:Shanxin Zhang , Weichao Zhuang , Zhenghong Xu
来源:[J].Analytical Biochemistry(IF 2.582), 2018, Vol.549, pp.149-156
摘要:Abstract(#br)DNase I hypersensitive sites (DHSs) are accessible chromatin zones hypersensitive to DNase I endonucleases in plant genome. DHSs have been used as markers for the presence of transcriptional regulatory elements. It is an important complement to develop computational ...
作者:Zhaohui Zhong , Shishi Liu , Xiaopei Liu ...
来源:[J].Rice(IF 2.381), 2020, Vol.13 (1), pp.4255-4270
摘要:... In order to make this system routine in plant biology, engineering efforts are needed for developing and optimizing such single transcript unit (STU) systems for plant genome editing. Results(#br)To develop novel intron-based STU (iSTU) CRISPR system (STU CRISPR 3.0), we firs...
作者:Raja Ragupathy , Frank M. You , Sylvie Cloutier
来源:[J].Trends in Plant Science(IF 11.808), 2013, Vol.18 (7), pp.367-376
摘要:Whole genome sequence assemblies have been generated for many plants. Annotation of transposable elements (TEs), which constitute the major proportion of genomes and play a significant role in epigenome alterations under stress, has not been given equal importance to that of gene...
作者:Waqar Islam
来源:[J].Molecular and Cellular Probes(IF 1.873), 2018, Vol.39, pp.47-52
摘要:Abstract(#br)Efficient plant genome editing is dependent upon induction of double stranded DNA breaks (DSBs) through site specified nucleases. These DSBs initiate the process of DNA repair which can either base upon homologous recombination (HR) or non-homologous end jointing (NH...
作者:S. A. Ranade , M. D. Lagu , S. M. Patankar ...
来源:[J].Bioscience Reports(IF 1.876), 1988, Vol.8 (5), pp.435-441
摘要:Abstract(#br)Digestion of nuclear DNAs of five plants, namely Cucurbita maxima (red gourd), Trichosanthes anguina (snake gourd), Cucumis sativus (cucumber), Cajanus cajan (pigeon pea) and Phaseolus vulgaris (french bean) with the restriction endonuclease MboI yielded discrete siz...
作者:Zhen Qin , Yanping Wang , Qingmei Wang ...
来源:[J].PLoS ONE(IF 3.73), 2017, Vol.10 (12)
摘要:Simple sequence repeats (SSRs) are widespread units on genome sequences, and play many important roles in plants. In order to reveal the evolution of plant genomes, we investigated the evolutionary regularities of SSRs during the evolution of plant species and the plant kingdom b...
作者:Isabelle Guigon , Sylvain Legrand , Jean-Frédéric Berthelot ...
来源:[J].BMC Genomics(IF 4.397), 2019, Vol.20 (1), pp.1-9
摘要:Abstract Background MicroRNAs (miRNAs) play crucial roles in post-transcriptional regulation of eukaryotic gene expression and are involved in many aspects of plant development. Although several prediction tools are available for metazoan genomes, the number of tools dedicated to...

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