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作者:Jayadri Sekhar Ghosh , Samik Bhattacharya , Amita Pal
来源:[J].Genetica(IF 1.681), 2017, Vol.145 (3), pp.319-333
摘要:... While the sequence alone could grossly reconstruct the traditional phylogeny amongst the 21-tropical species studied, some anomalies were encountered that prompted a further refinement of the phylogenetic analyses. Therefore, we integrated the secondary structure of the ITS s...
作者:Lingxi Zhou , Yu Lin , Bing Feng ...
来源:[J].BMC Genomics(IF 4.397), 2017, Vol.18 (7)
摘要:... Because these changes are rare compared to sequence mutations, they allow the inference of phylogeny further back in evolutionary time. There exist many computational methods for the reconstruction of gene-order phylogenies, including widely used maximum parsimonious methods ...
作者:Johanne Ahrenfeldt , Carina Skaarup , Henrik Hasman ...
来源:[J].BMC Genomics(IF 4.397), 2017, Vol.18 (1)
摘要:Whole genome sequencing (WGS) is increasingly used in diagnostics and surveillance of infectious diseases. A major application for WGS is to use the data for identifying outbreak clusters, and there is therefore a need for methods that can accurately and efficiently infer phyloge...
作者:Nadine Bernhardt , Jonathan Brassac , Benjamin Kilian ...
来源:[J].BMC Evolutionary Biology(IF 3.285), 2017, Vol.17 (1)
摘要:... We analysed the phylogeny of chloroplast lineages among nearly all monogenomic Triticeae taxa and polyploid wheat species aiming at a deeper understanding of the tribe’s evolution. We used on- and off-target reads of a target-enrichment experiment followed by Illumina s...
作者:Mari H. Eilertsen , Jon A. Kongsrud , Tom Alvestad ...
来源:[J].BMC Evolutionary Biology(IF 3.285), 2017, Vol.17 (1)
摘要:... Here we present a review of the habitat use of ampharetid species in CBEs, and a multi-gene phylogeny of Ampharetidae, with increased taxon sampling compared to previous studies.
作者:Jie Song , Bao-Kai Cui
来源:[J].BMC Evolutionary Biology(IF 3.285), 2017, Vol.17 (1)
摘要:... We used six genetic markers to estimate a genus-level phylogeny including (1) the internal transcribed spacer (ITS), (2) nuclear large subunit rDNA (nrLSU), (3) nuclear small subunit rDNA (nrSSU), (4) translation elongation factor 1-α (EF-1α), (5) DNA-directed RNA polymera...
作者:Jie Yu , Yuqin Song , Yan Ren ...
来源:[J].BMC Microbiology(IF 3.104), 2017, Vol.17 (1)
摘要:The genomic diversity of different species within the genus Lactococcus and the relationships between genomic differentiation and environmental factors remain unclear. In this study, type isolates of ten Lactococcus species/subspecies were sequenced to assess their genomic charac...
作者:Yan Yang , Xing Fan , Long Wang ...
来源:[J].BMC Plant Biology(IF 4.354), 2017, Vol.17 (1)
摘要:Elytrigia Desv. is a genus with a varied array of morphology, cytology, ecology, and distribution in Triticeae. Classification and systematic position of Elytrigia remain controversial. We used nuclear internal-transcribed spacer (nrITS) sequences and chloroplast trn L-F region t...
作者:Adam L. Bazinet
来源:[J].BMC Evolutionary Biology(IF 3.285), 2017, Vol.17 (1)
摘要:Bacillus cereus sensu lato ( s. l. ) is an ecologically diverse bacterial group of medical and agricultural significance. In this study, I use publicly available genomes and novel bioinformatic workflows to characterize the B. cereus s. l. pan-genome and perform the largest ...
作者:Jessica A. Goodheart , Adam L. Bazinet , Ángel Valdés ...
来源:[J].BMC Evolutionary Biology(IF 3.285), 2017, Vol.17 (1)
摘要:... In this study, RNA-Seq data is used to produce a phylogeny of Cladobranchia, a group of marine invertebrates that feed on a diverse array of prey taxa but mostly specialize on cnidarians. The broad range of prey type preferences allegedly present in two major groups within Cl...

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